​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​2019

Nudelman, H., Y.-Z. Lee, Y.-L. Hung, S. Kolusheva, A. Upcher, Y.-C. Chen, J.-Y. Chen, S.-C. Sue and R. Zarivach (2018). "Understanding the Biomineralization Role of Magnetite-Interacting Components (MICs) From Magnetotactic Bacteria." Frontiers in microbiology 9: 2480-2480. Paper


Shrivastava, R., M. Drory-Retwitzer and M. Shapira (2019). "Nutritional stress targets LeishIF4E-3 to storage granules that contain RNA and ribosome components in Leishmania." PLoS Negl Trop Dis 13(3): e0007237.​ Paper​

Varon, M. , Levy, T. , Mazor, G. , Ben David, H. , Marciano, R. , Kerlin, Y. , Prasad, M. , Elkabets, M. , Pauck, D. , Ahmadov, U. , Picard, D. , Qin, N. , Borkhardt, A. , Reifenberger, G. , Leprivier, G. , Remke, M. and Rotblat, B. (2019), "The long non‐coding RNA TP73‐AS1 promotes tumorigenicity of medulloblastoma cells". Int. J. Cancer. Accepted Author Manuscript. doi:10.1002/ijc.32400

Schlesinger, O., R. Dandela, A. Bhagat, R. Adepu, M. M. Meijler, L. Xia and L. Alfonta (2018). "Photo-switchable microbial fuel-cells." Biotechnology and Bioengineering​ 115(5): 1355-1360.​ Paper

Mazor, G., L. Levin, D. Picard, U. Ahmadov, H. Carén, A. Borkhardt, G. Reifenberger, G. Leprivier, M. Remke and B. Rotblat (2019). "The lncRNA TP73-AS1 is linked to aggressiveness in glioblastoma and promotes temozolomide resistance in glioblastoma cancer stem cells." Cell Death & Disease 10(3): 246. Paper​

de Abreu e Lima, F., K. Li, W. Wen, J. Yan, Z. Nikoloski, L. Willmitzer and Y. Brotman (2018). "Unraveling lipid metabolism in maize with time-resolved multi-omics data." The Plant Journal 93(6): 1102-1115.​ Paper​

Hughes, D. P. and F. Libersat (2019). "Parasite manipulation of host behavior." Current Biology 29(2): R45-R47. Paper

Korman, M., Y. Elharar, I. Fishov and E. Gur (2019). "The transcription of pafA, encoding the prokaryotic ubiquitin-like protein ligase, is regulated by PafBC." Future Microbiology 14(1): 11-21. ​Paper

Marciano, R., M. Prasad, T. Ievy, S. Tzadok, G. Leprivier, M. Elkabets and B. Rotblat (2019). "High-Throughput Screening Identified Compounds Sensitizing Tumor Cells to Glucose Starvation in Culture and VEGF Inhibitors In Vivo." Cancers (Basel) 11(2).​ Paper​

Perez Y., R. Bar-Yaacov, R. Kadir, O. Wormser, I. Shelef, O. S. Birk, H. Flusser​ and R. Y. Birnbaum (2019). "Mutations in the microtubule-associated protein MAP11 (C7orf43) cause microcephaly in humans and zebrafish." Brain 142(3): 574-585. Paper

Reichenthal, A., M. Ben-Tov, O. Ben-Shahar and R. Segev (2019). "What pops out for you pops out for fish: Four common visual features." Journal of Vision 19(1): 1-1.​ Paper​

Lazare, S., D. Bechar, A. R. Fernie, Y. Brotman and M. Zaccai (2019). "The proof is in the bulb: glycerol influences key stages of lily development."  97(2): 321-340.​ Paper

Marom, S., A. Blumberg, A. Kundaje and D. Mishmar (2019). "mtDNA Chromatin-like Organization Is Gradually Established during Mammalian Embryogenesis." iScience 12: 141-151.​ Paper​

Shpigel, N., N. Shemesh, M. Kishner and A. Ben-Zvi (2019). "Dietary restriction and gonadal signaling differentially regulate post-development quality control functions in Caenorhabditis elegans."  Aging Cell: e12891.​ ​Paper​

De, S., L. Levin and B. Rotblat (2019) "lncRNA in worms – Time to meet the neighbors". Current Opinion in Systems Biology 13:10-15.​​ Paper


2018

Hecht, N., O. Regev, D. Dovrat, A. Aharoni and E. Gur (2018). "Proteasome accessory factor A (PafA) transferase activity makes sense in the light of its homology with glutamine synthetase." Journal of Molecular Biology 430(5): 668-681. Paper

Yaacov, R. B., R. Eshel, E. Farhi, F. Shemuluvich, T. Kaplan and R. Y. Birnbaum (2018). "Functional characterization of the ZEB2 regulatory landscape." Human Molecular Genetics: ddy440-ddy440. Paper​

Adler, G., A. K. Mishra, T. Maymon, D. Raveh and D. Bar-Zvi (2018). "Overexpression of Arabidopsis ubiquitin ligase AtPUB46 enhances tolerance to drought and oxidative stress." Plant Science 276: 220-228. Paper​

Kaiser, M., R. Arvidson, R. Zarivach, M. E. Adams and F. Libersat (2018). "Molecular cross-talk in a unique parasitoid manipulation strategy." Insect Biochem Mol Biol. ​Paper

Keidar-Friedman, D., I. Bariah and K. Kashkush (2018). "Genome-wide analyses of miniature inverted-repeat transposable elements reveals new insights into the evolution of the Triticum-Aegilops group." PLOS ONE 13(10): e0204972.​ https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0204972

Arvidson, R., M. Kaiser, S. S. Lee, J. P. Urenda, C. J. Dail, H. Mohammed, C. Nolan, S.-Q. Pan, J. E. Stajich, F. Libersat and M. E. Adams (2018). "Parasitoid Jewel Wasp Mounts Multi-Pronged Neurochemical Attack to Hijack a Host Brain." Molecular & Cellular Proteomics.  mcp.RA118.000908​ https://doi.org/10.1074/mcp.RA118.000908

Lieberman, Y., L. Rokach and T. Shay (2018). "CaSTLe – Classification of single cells by transfer learning: Harnessing the power of publicly available single cell RNA sequencing experiments to annotate new experiments." PLOS ONE 13(10): e0205499. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0205499​

Goliand, I., S. Adar-Levor, I. Segal, D. Nachmias, T. Dadosh, M. M. Kozlov and N. Elia (2018). "Resolving ESCRT-III Spirals at the Intercellular Bridge of Dividing Cells Using 3D STORM." Cell Reports 24(7): 1756-1764. https://www.sciencedirect.com/science/article/pii/S2211124718311549

Blumberg, A., C. G. Danko, A. Kundaje and D. Mishmar (2018). "A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization." Genome Research 28(8): 1158-1168. https://genome.cshlp.org/content/28/8/1158.abstract​

Hirsch, N., R. Eshel, R. Bar Yaacov, T. Shahar, F. Shmulevich, I. Dahan, N. Levaot, T. Kaplan, D. G. Lupiáñez and R. Y. Birnbaum (2018). "Unraveling the transcriptional regulation of TWIST1 in limb development." PLOS Genetics 14(10): e1007738. https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007738

Zaretsky, M., E. Roine, and J. Eichler, "Sialic Acid-Like Sugars in Archaea: Legionaminic Acid Biosynthesis in the Halophile Halorubrum sp. PV6". Frontiers in microbiology, 2018. 9: p. 2133-2133. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137143/

Garbowicz, K., Z. Liu, S. Alseekh, D. Tieman, M. Taylor, A. Kuhalskaya, I. Ofner, D. Zamir, H.J. Klee, A.R. Fernie, Y. Brotman (2018) "Quantitative Trait Loci Analysis Identifies a Prominent Gene Involved in the Production of Fatty Acid-Derived Flavor Volatiles in Tomato". Molecular Plant 11(9):1147 - 1165. https://doi.org/10.1016/j.molp.2018.06.003​

Barshad, G., A. Blumberg, T. Cohen, and D. Mishmar (2018) "Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genesGenome Research 28: 952-967​

Gertman, O., D. Omer, A. Hendler, D. Stein, L.Onn, Y. Khukhin, M. Portillo, R. Zarivach, H.Y. Cohen, D. Toiber, A. Aharoni (2018) "Directed evolution of SIRT6 for improved deacylation and glucose homeostasis maintenance." Scientific Reports 8(1):3538​ https://www.nature.com/articles/s41598-018-21887-9​

Uebe R., N. Keren‐Khadmy, N. Zeytuni, E. Katzmann, Y. Navon, G. Davidov, R. Bitton, J.M. Plitzko, D. Schüler, and R. Zarivach (2018). "The dual role of MamB in magnetosome membrane assembly and magnetite biomineralization." Molecular Microbiology, 107: 542-557. https://onlinelibrary.wiley.com/doi/full/10.1111/mmi.13899​

Soreanu I., A. Hendler, D. Dahan, D. Dovrat and A. Aharoni (2018). "Marker-free genetic manipulations in yeast using CRISPR/CAS9 system." Current Genetics  [Epub ahead of print] https://doi.org/10.1007/s00294-018-0831-y​

Libersat F., M. Kaiser and S. Emanuel (2018). "Mind Control: How Parasites Manipulate Cognitive Functions in Their Insect Hosts." Frontiers in Psychology 9:572  ​https://www.frontiersin.org/article/10.3389/fpsyg.2018.00572     

​Eichler, J. and B. Imperiali (2018). "Biogenesis of Asparagine-Linked Glycoproteins Across Domains of Life—Similarities and Differences.ACS Chemical Biology 13 (4), 833-837.​https://pubs.acs.org/doi/10.1021/acschembio.8b00163​

Doron, L., P. Goloubinoff, M. Shapira (2018). "ZnJ2 Is a Member of a Large Chaperone Family in the Chloroplast of Photosynthetic Organisms that Features a DnaJ-Like Zn-Finger Domain." Frontiers in Molecular Biosciences 5:2. https://www.frontiersin.org/article/10.3389/fmolb.2018.00002 ​

Meleppattu, S., H. Arthanari, A. Zinoviev, A. Boeszoermenyi, G. Wagner, M. Shapira and M. Léger-Abraham (2018). "Structural basis for LeishIF4E-1 modulation by an interacting protein in the human parasite Leishmania major." Nucleic Acids Research 46(7): 3791-3801. http://dx.doi.org/10.1093/nar/gky194​​

Hughes, D. P. and F. Libersat (2018). "Neuroparasitology of Parasite–Insect Associations." Annual Review of Entomology 63(1): 471-487. https://www.annualreviews.org/doi/abs/10.1146/annurev-ento-020117-043234

Savaya-Alkalay, A., O. Ovadia, A. Barki and A. Sagi (2018). "Size-selective predation by all-male prawns: implications for sustainable biocontrol of snail invasions." Biological Invasions 20(1): 137-149. https://doi.org/10.1007/s10530-017-1522-1​

Marciano, R., G. Leprivier and B. Rotblat (2018). "Puromycin labeling does not allow protein synthesis to be measured in energy-starved cells." Cell Death & Disease 9(2): 39. https://doi.org/10.1038/s41419-017-0056-x​

Nudelman, H., T. Perez Gonzalez, S. Kolushiva, M. Widdrat, V. Reichel, A. Peigneux, G. Davidov, R. Bitton, D. Faivre, C. Jimenez-Lopez and R. Zarivach (2018). "The importance of the helical structure of a MamC-derived magnetite-interacting peptide for its function in magnetite formation." Acta Crystallographica Section D 74(1): 10-20. ​https://doi.org/10.1107/S2059798317017491​

Shoshan-Barmatz, V., Y. Krelin and A. Shteinfer-Kuzmine (2018). "VDAC1 functions in Ca2+ homeostasis and cell life and death in health and disease." Cell Calcium 69: 81-100. http://www.sciencedirect.com/science/article/pii/S0143416017301057​

Leeggangers, H. A. C. F., T. Rosilio-Brami, J. Bigas-Nadal, N. Rubin, A. D. J. v​an Dijk, F. F. Nunez de Caceres Gonzalez, S. Saadon-Shitrit, H. Nijveen, H. W. M. Hilhorst, R. G. H. Immink and M. Zaccai (2018). "Tulipa gesneriana and Lilium longiflorum PEBP Genes and Their Putative Roles in Flowering Time Control." Plant and Cell Physiology 59(1): 90-106. http://dx.doi.org/10.1093/pcp/pcx164​

​​

Keidar, D., C. Doron and K. Kashkush (2018). "Genome-wide analysis of a recently active retrotransposon, Au SINE, in wheat: content, distribution within subgenomes and chromosomes, and gene associations." Plant Cell Reports 37(2): 193-208. https://doi.org/10.1007/s00299-017-2213-1​


Ott, C., D. Nachmias, S. Adar, M. Jarnik, S. Sherman, R. Y. Birnbaum, J. Lippincott-Schwartz and N. Elia (2018). "VPS4 is a dynamic component of the centrosome that regulates centrosome localization of γ-tubulin, centriolar satellite stability and ciliogenesis." Scientific Reports 8(1): 3353. https://doi.org/10.1038/s41598-018-21491-x​


2017

Kimmerling, N., O. Zuqert, G. Amitai, T. Gurevich, R. Armoza-Zvuloni, I. Kolesnikov, I. Berenshtein, S. Melamed, S. Gilad, S. Benjamin, A. Rivlin, M. Ohavia, C. B. Paris, R. Holzman, M. Kiflawi and R. Sorek (2018). "Quantitative species-level ecology of reef fish larvae via metabarcoding." Nature Ecology & Evolution 2(2): 306-316. https://doi.org/10.1038/s41559-017-0413-2​​


Weizman, T., I. Levin, M. Zaretsky, I. Sagi and A. Aharoni (2017). "Increased Potency of a Bi-spe​cific TL1A-ADAM17 (TACE) Inhibitor by Cell Surface Targeting." Frontiers in Molecular Biosciences 4: 61. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5572276/

​Barber-Zucker, S., B. Shaanan and R. Zarivach (2017). "Transition metal binding selectivity in proteins and its correlation with the phylogenomic classification of the cation diffusion facilitator protein family." Scientific Reports 7(1): 16381. https://doi.org/10.1038/s41598-017-16777-5​​

Elharar, Y., A. R. Podilapu, Z. Guan, S. S. Kulkarni and J. Eichler (2017). "Assembling Glycan-Charged Dolichol Phosphates: Chemoenzymatic Synthesis of a Haloferax volcanii N-Glycosylation Pathway Intermediate." Bioconjugate Chemistry 28(9): 2461-2470. https://doi.org/10.1021/acs.bioconjchem.7b00436​

Domb, K., D. Keidar, B. Yaakov, V. Khasdan and K. Kashkush (2017). "Transposable elements generate population-specific insertional patterns and allelic variation in genes of wild emmer wheat (Triticum turgidum ssp. dicoccoides)." BMC Plant Biology 17(1): 175. https://doi.org/10.1186/s12870-017-1134-z​​​

Bird, T. L. F., M. Dorman, A. Ramot, A. Bouskila, P. Bar and E. Groner (2017). "Shrub Encroachment Effects on Habitat Heterogeneity and Beetle Diversity in a Mediterranean Coastal Dune System." Land Degradation & Development. http://dx.doi.org/10.1002/ldr.2807

Hadar, A., I. Hadas, A. Lazarovits, U. Alyagon, D. Eliraz and A. Zangen (2017). "Answering the missed call: Initial exploration of cognitive and electrophysiological changes associated with smartphone use and abuse." PLOS ONE 12(7): e0180094. https://doi.org/10.1371/journal.pone.0180094

Algov, I., J. Grushka, R. Zarivach and L. Alfonta (2017). "Highly Efficient Flavin–Adenine Dinucleotide Glucose Dehydrogenase Fused to a Minimal Cytochrome C Domain." Journal of the American Chemical Society. http://dx.doi.org/10.1021/jacs.7b07011

Sasson, G., S. Kruger Ben-Shabat, E. Seroussi, A. Doron-Faigenboim, N. Shterzer, S. Yaacoby, M. E. Berg Miller, B. A. White, E. Halperin and I. Mizrahi (2017). "Heritable Bovine Rumen Bacteria Are Phylogenetically Related and Correlated with the Cow's Capacity To Harvest Energy from Its Feed." mBio 8(4). http://mbio.asm.org/content/8/4/e00703-17.abstract

Shalev, Y., I. Turgeman-Grott, A. Tamir, J. Eichler and U. Gophna (2017). "Cell Surface Glycosylation Is Required for Efficient Mating of Haloferax volcanii." Frontiers in Microbiology 8: 1253. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5496957/

Gur, E., M. Korman, N. Hecht, O. Regev, S. Schlussel, N. Silberberg and Y. Elharar (2017). "How to control an intracellular proteolytic system: Coordinated regulatory switches in the mycobacterial Pup-proteasome system." Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1864(12): 2253-2260. http://www.sciencedirect.com/science/article/pii/S0167488917302288

Shoshan-Barmatz, V., S. De and A. Meir (2017). "The Mitochondrial Voltage-Dependent Anion Channel 1, Ca(2+) Transport, Apoptosis, and Their Regulation." Frontiers in Oncology 7: 60. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5385329/

Abebe, A. H., A. Aranovich and I. Fishov (2017). "HU content and dynamics in Escherichia coli during the cell cycle and at different growth rates." FEMS Microbiology Letters 364(19): fnx195-fnx195. http://dx.doi.org/10.1093/femsle/fnx195

Carmi, L., U. Alyagon, N. Barnea-Ygael, J. Zohar, R. Dar and A. Zangen (2017). "Clinical and electrophysiological outcomes of deep TMS over the medial prefrontal and anterior cingulate cortices in OCD patients." Brain Stimulation. http://www.sciencedirect.com/science/article/pii/S1935861X17308963

Alcalay, Y., I. Tsurim and O. Ovadia (2017). "Modelling the effects of spatial heterogeneity and temporal variation in extinction probability on mosquito populations." Ecological Applications: n/a-n/a. http://dx.doi.org/10.1002/eap.1612

Wu, S., T. Tohge, Á. Cuadros-Inostroza, H. Tong, H. Tenenboim, R. Kooke, M. Méret, J. B. Keurentjes, Z. Nikoloski, A. R. Fernie, L. Willmitzer and Y. Brotman (2017). "Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions." Molecular Plant. http://www.sciencedirect.com/science/article/pii/S1674205217302423

Shpak, N., R. Manor, L. Katzir Abilevich, O. Mantal, K. Shavit, E. D. Aflalo, D. Toiber and A. Sagi (2017). "Short versus long double-stranded RNA activation of a post-transcriptional gene knockdown pathway." RNA Biology: 00-00. http://dx.doi.org/10.1080/15476286.2017.1356567

Friedman, N., E. Jami and I. Mizrahi (2017). "Compositional and functional dynamics of the bovine rumen methanogenic community across different developmental stages." Environmental Microbiology 19(8): 3365-3373. http://dx.doi.org/10.1111/1462-2920.13846

Godin, N. and J. Eichler (2017). "The Mitochondrial Protein Atlas: A Database of Experimentally Verified Information on the Human Mitochondrial Proteome." Journal of Computational Biology 24(9): 906-916. https://doi.org/10.1089/cmb.2017.0011

Hendler, A., E. M. Medina, A. Kishkevich, M. Abu-Qarn, S. Klier, N. E. Buchler, R. A. M. de Bruin and A. Aharoni (2017). "Gene duplication and co-evolution of G1/S transcription factor specificity in fungi are essential for optimizing cell fitness." PLOS Genetics 13(5): e1006778. https://doi.org/10.1371/journal.pgen.1006778

Elharar, Y., S. Schlussel, N. Hecht, M. M. Meijler and E. Gur (2017). "The regulatory significance of tag recycling in the mycobacterial Pup-proteasome system." The FEBS Journal 284(12): 1804-1814. http://dx.doi.org/10.1111/febs.14086​

Shteinfer-Kuzmine, A., T. Arif, Y. Krelin, S. S. Tripathi, A. Paul and V. Shoshan-Barmatz (2017). "Mitochondrial VDAC1-based peptides: Attacking oncogenic properties in glioblastoma." Oncotarget 8(19): 31329-31346. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5458211/​

Aloni, I., S. Markman and Y. Ziv (2017). "February precipitation in the wintering grounds of the lesser whitethroat, Sylvia curruca: is it a cue for migration onset?" Royal Society Open Science 4(2): 160755. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5367318/​

Schvartz, T., N. Aloush, I. Goliand, I. Segal, D. Nachmias, E. Arbely and N. Elia (2017). "Direct fluorescent-dye labeling of α-tubulin in mammalian cells for live cell and superresolution imaging." Molecular Biology of the Cell 28(21): 2747-2756. http://www.molbiolcell.org/content/28/21/2747.abstract​

Scatà, G., A.-S. Darmaillacq, L. Dickel, S. McCusker and N. Shashar (2017). "Going Up or Sideways? Perception of Space and Obstacles Negotiating by Cuttlefish." Frontiers in Physiology 8(173). https://www.frontiersin.org/article/10.3389/fphys.2017.00173​​

Livne-Luzon, S., O. Ovadia, G. Weber, Y. Avidan, H. Migael, S. I. Glassman, T. D. Bruns and H. Shemesh (2017). "Small-scale spatial variability in the distribution of ectomycorrhizal fungi affects plant performance and fungal diversity." Ecology Letters 20(9): 1192-1202. http://dx.doi.org/10.1111/ele.12816​

Ner-Gaon, H., A. Melchior, N. Golan, Y. Ben-Haim and T. Shay (2017). "JingleBells: A Repository of Immune-Related Single-Cell RNA–Sequencing Datasets." The Journal of Immunology 198(9): 3375-3379. http://www.jimmunol.org/content/jimmunol/198/9/3375.full.pdf​

Bar, M., B. Rotblat and O. Rechavi (2017). "Nomad scientists and the ones left behind." eLife 6: e30183.​https://doi.org/10.7554/eLife.30183

Abehsera, S., S. Peles, J. Tynyakov, S. Bentov, E. D. Aflalo, S. Li, F. Li, J. Xiang and A. Sagi (2017). "MARS: A protein family involved in the formation of vertical skeletal elements." Journal of Structural Biology 198(2): 92-102. http://www.sciencedirect.com/science/article/pii/S1047847717300564​

Arif, T., Y. Krelin, I. Nakdimon, D. Benharroch, A. Paul, D. Dadon-Klein and V. Shoshan-Barmatz (2017). "VDAC1 is a molecular target in glioblastoma, with its depletion leading to reprogrammed metabolism and reversed oncogenic properties." Neuro-Oncology 19(7): 951-964. http://dx.doi.org/10.1093/neuonc/now297

Levin, I., M. Zaretsky and A. Aharoni (2017). "Directed evolution of a soluble human DR3 receptor for the inhibition of TL1A induced cytokine secretion." PLOS ONE 12(3): e0173460. https://doi.org/10.1371/journal.pone.0173460​

Vijayan, S., B. P. Kotler and Z. Abramsky (2017). "A predator equalizes rate of capture of a schooling prey in a patchy environment." Behavioural Processes 138(Supplement C): 91-95. http://www.sciencedirect.com/science/article/pii/S0376635717300761​​

Marom, S., M. Friger and D. Mishmar (2017). "MtDNA meta-analysis reveals both phenotype specificity and allele heterogeneity: a model for differential association."  7: 43449. http://dx.doi.org/10.1038/srep43449​

​Eichler, J. and M. Koomey "Sweet New Roles for Protein Glycosylation in Prokaryotes." Trends in Microbiology 25(8): 662-672. http://dx.doi.org/10.1016/j.tim.2017.03.001​

Toiber, D., G. Leprivier and B. Rotblat (2017). "Long noncoding RNA: noncoding and not coded."  3: 16104. http://dx.doi.org/10.1038/cddiscovery.2016.104

Josef, N., I. Berenshtein, M. Rousseau, G. Scata, G. Fiorito and N. Shashar (2016). "Size Matters: Observed and Modeled Camouflage Response of European Cuttlefish (Sepia officinalis) to Different Substrate Patch Sizes during Movement." Frontiers in Physiology 7: 671. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5239790/

Levin, L. and D. Mishmar (2017). "The genomic landscape of evolutionary convergence in mammals, birds and reptiles."  1: 0041. http://dx.doi.org/10.1038/s41559-016-0041

Adler, G., Z. Konrad, L. Zamir, A. K. Mishra, D. Raveh and D. Bar-Zvi (2017). "The Arabidopsis paralogs, PUB46 and PUB48, encoding U-box E3 ubiquitin ligases, are essential for plant response to drought stress." BMC Plant Biology 17: 8. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5225562/

Chemla, Y., M. Friedman, M. Heltberg, A. Bakhrat, E. Nagar, R. Schwarz, M. H. Jensen and L. Alfonta (2017). "Expanding the Genetic Code of a Photoautotrophic Organism." Biochemistry 56(16): 2161-2165. http://dx.doi.org/10.1021/acs.biochem.7b00131​

Eichler, J. and Z. Guan (2017). "Lipid sugar carriers at the extremes: The phosphodolichols Archaea use in N-glycosylation." Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids 1862(6): 589-599. http://www.sciencedirect.com/science/article/pii/S1388198117300537

Bershtein, S., A. W. R. Serohijos and E. I. Shakhnovich (2017). "Bridging the physical scales in evolutionary biology: from protein sequence space to fitness of organisms and populations." Current Opinion in Structural Biology 42: 31-​40. http://www.sciencedirect.com/science/article/pii/S0959440X16301762

Schlesinger, O., Y. Chemla, M. Heltberg, E. Ozer, R. Marshall, V. Noireaux, M. H. Jensen and L. Alfonta (2017). "Tuning of Recombinant Protein Expression in Escherichia coli by Manipulating Transcription, Translation Initiation Rates, and Incorporation of Noncanonical Amino Acids." ACS Synthetic Biology. http://dx.doi.org/10.1021/acssynbio.7b00019

Blumberg, A., E. J. Rice, A. Kundaje, C. G. Danko and D. Mishmar (2017). "Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution." Genome Research 27(3): 362-373. http://genome.cshlp.org/content/27/3/362.abstract

Kaluski, S., M. Portillo, A. Besnard, D. Stein, M. Einav, L. Zhong, U. Ueberham, T. Arendt, R. Mostoslavsky, A. Sahay and D. Toiber "Neuroprotective Functions for the Histone Deacetylase SIRT6." Cell Reports 18(13): 3052-3062. http://dx.doi.org/10.1016/j.celrep.2017.03.008

Bensoussan, L., S. Moraïs, B. Dassa, N. Friedman, B. Henrissat, V. Lombard, E. A. Bayer and I. Mizrahi (2017). "Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome." Environmental Microbiology 19(1): 185-197. http://dx.doi.org/10.1111/1462-2920.13561

Tamir, A. and J. Eichler (2017). "N-Glycosylation Is Important for Proper Haloferax volcanii S-Layer Stability and Function." Applied and Environmental Microbiology 83(6). http://aem.asm.org/content/83/6/e03152-16

​​Emanuel, S. and F. Libersat (2017). "Do Quiescence and Wasp Venom-Induced Lethargy Share Common Neuronal Mechanisms in Cockroaches?" PLOS ONE 12(1): e0168032. http://dx.doi.org/10.1371%2Fjournal.pone.0168032

Shpak, N., R. Manor, E. D. Aflalo and A. Sagi (2017). "Three generations of cultured prawn without W chromosome." Aquaculture 467: 41-48. http://www.sciencedirect.com/science/article/pii/S004484861630312X

Friedman, N., E. Shriker, B. Gold, T. Durman, R. Zarecki, E. Ruppin and I. Mizrahi (2017). "Diet-induced changes of redox potential underlie compositional shifts in the rumen archaeal community." Environmental Microbiology 19(1): 174-184. http://dx.doi.org/10.1111/1462-2920.13551

Barber-Zucker, S. and R. Zarivach (2017). "A Look into the Biochemistry of Magnetosome Biosynthesis in Magnetotactic Bacteria." ACS Chemical Biology 12(1): 13-22. http://dx.doi.org/10.1021/acschembio.6b01000

 

2016

Bar-Lavan, Y., N. Shemesh, S. Dror, R. Ofir, E. Yeger-Lotem and A. Ben-Zvi (2016). "A Differentiation Transcription Factor Establishes Muscle-Specific Proteostasis in Caenorhabditis elegans." PLOS Genetics 12(12): e1006531. https://doi.org/10.1371/journal.pgen.1006531

Gavish, Y. and Y. Ziv (2016). "Species-occupancy distribution removes an excessive parameter from species-area relationship." Journal of Biogeography. http://dx.doi.org/10.1111/jbi.12869

Gavish, Y. and Y. Ziv (2016). "Joint Effect of Habitat Identity and Spatial Distance on Spiders’ Community Similarity in a Fragmented Transition Zone." PLOS ONE 11(12): e0168417. http://dx.doi.org/10.1371%2Fjournal.pone.0168417

Ozer, E., Y. Chemla, O. Schlesinger, H. Y. Aviram, I. Riven, G. Haran and L. Alfonta (2016). "In vitro suppression of two different stop codons." Biotechnology and Bioengineering. http://dx.doi.org/10.1002/bit.26226

Bar-Lavan, Y., N. Shemesh and A. Ben-Zvi (2016). "Chaperone families and interactions in metazoa." Essays In Biochemistry 60(2): 237-253. http://essays.biochemistry.org/content/ppebio/60/2/237.full.pdf

Wu, S., S. Alseekh, Á. Cuadros-Inostroza, C. M. Fusari, M. Mutwil, R. Kooke, J. B. Keurentjes, A. R. Fernie, L. Willmitzer and Y. Brotman (2016). "Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana." PLOS Genetics 12(10): e1006363. http://dx.doi.org/10.1371%2Fjournal.pgen.1006363

Cohen, T., L. Levin and D. Mishmar (2016). "Ancient Out-of-Africa Mitochondrial DNA Variants Associate with Distinct Mitochondrial Gene Expression Patterns." PLOS Genetics 12(11): e1006407. http://dx.doi.org/10.1371%2Fjournal.pgen.1006407

Melkov, A., R. Baskar, Y. Alcalay and U. Abdu (2016). "A new mode of mitochondrial transport and polarized sorting regulated by Dynein, Milton and Miro." Development 143(22): 4203-4213. http://dev.biologists.org/content/develop/143/22/4203.full.pdf

Levy, T., O. Rosen, B. Eilam, D. Azulay, E. D. Aflalo, R. Manor, A. Shechter and A. Sagi (2016). "A Single Injection of Hypertrophied Androgenic Gland Cells Produces All-Female Aquaculture." Marine Biotechnology 18(5): 554-563. http://dx.doi.org/10.1007/s10126-016-9717-5

Tendler, A., N. Barnea Ygael, Y. Roth and A. Zangen (2016). "Deep transcranial magnetic stimulation (dTMS) – beyond depression." Expert Review of Medical Devices 13(10): 987-1000. http://dx.doi.org/10.1080/17434440.2016.1233812

Bar-Yaacov, D., I. Frumkin, Y. Yashiro, T. Chujo, Y. Ishigami, Y. Chemla, A. Blumberg, O. Schlesinger, P. Bieri, B. Greber, N. Ban, R. Zarivach, L. Alfonta, Y. Pilpel, T. Suzuki and D. Mishmar (2016). "Mitochondrial 16S rRNA Is Methylated by tRNA Methyltransferase TRMT61B in All Vertebrates." PLOS Biology 14(9): e1002557. http://dx.doi.org/10.1371%2Fjournal.pbio.1002557

Guan, Z., A. Delago, P. Nussbaum, B. Meyer, S. V. Albers and J. Eichler (2016). "N-glycosylation in the thermoacidophilic archaeon Sulfolobus acidocaldarius involves a short dolichol pyrophosphate carrier." FEBS Lett 590(18): 3168-3178. https://www.ncbi.nlm.nih.gov/pubmed/27490243

Tenenboim, H., A. Burgos, L. Willmitzer and Y. Brotman (2016). "Using lipidomics for expanding the knowledge on lipid metabolism in plants." Biochimie 130: 91-96. http://www.sciencedirect.com/science/article/pii/S0300908416301134

Barber-Zucker, S., R. Uebe, G. Davidov, Y. Navon, D. Sherf, J. H. Chill, I. Kass, R. Bitton, D. Schüler and R. Zarivach (2016). "Disease-Homologous Mutation in the Cation Diffusion Facilitator Protein MamM Causes Single-Domain Structural Loss and Signifies Its Importance." Scientific Reports 6: 31933. http://dx.doi.org/10.1038/srep31933

Lazare, S. and M. Zaccai (2016). "Flowering pathway is regulated by bulb size in Lilium longiflorum (Easter 
lily)." Plant Biology 18(4): 577-584. http://dx.doi.org/10.1111/plb.12440

Gal, I., O. Schlesinger, L. Amir and L. Alfonta (2016). "Yeast surface display of dehydrogenases in microbial fuel-cells." Bioelectrochemistry 112: 53-60. http://www.sciencedirect.com/science/article/pii/S1567539416300901

Kandiba, L. and J. Eichler (2016). "AglM and VNG1048G, Two Haloarchaeal UDP-Glucose Dehydrogenases, Show Different Salt-Related Behaviors." Life 6(3): 31. http://www.mdpi.com/2075-1729/6/3/31

Regev, O., M. Korman, N. Hecht, Z. Roth, N. Forer, R. Zarivach and E. Gur (2016). "An Extended Loop of the Pup Ligase, PafA, Mediates Interaction with Protein Targets." Journal of Molecular Biology 428(20): 4143-4153. http://dx.doi.org/10.1016/j.jmb.2016.07.021

Kandiba, L., C.-W. Lin, M. Aebi, J. Eichler and Y. Guerardel (2016). "Structural characterization of the N-linked pentasaccharide decorating glycoproteins of the halophilic archaeon Haloferax volcanii." Glycobiology 26(7): 745-756. http://glycob.oxfordjournals.org/content/26/7/745.abstract

Sherman, S., D. Kirchenbuechler, D. Nachmias, A. Tamir, S. Werner, M. Elbaum and N. Elia (2016). "Resolving new ultrastructural features of cytokinetic abscission with soft-X-ray cryo-tomography." Scientific Reports 6: 27629. http://www.ncbi.nlm.nih.gov/pubmed/27282220

Doron, L., N. a. Segal and M. Shapira (2016). "Transgene expression in microalgae – from tools to applications." Frontiers in Plant Science 7. http://journal.frontiersin.org/article/10.3389/fpls.2016.00505/full

Ben-Hail, D. and V. Shoshan-Barmatz (2016). "VDAC1-interacting anion transport inhibitors inhibit VDAC1 oligomerization and apoptosis." Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1863(7, Part A): 1612-1623. http://www.sciencedirect.com/science/article/pii/S0167488916300830

Radoul, M., L. Lewin, B. Cohen, R. Oren, S. Popov, G. Davidov, M. H. Vandsburger, A. Harmelin, R. Bitton, J.-M. Greneche, M. Neeman and R. Zarivach (2016). "Genetic manipulation of iron biomineralization enhances MR relaxivity in a ferritin-M6A chimeric complex." Scientific Reports 6: 26550. http://dx.doi.org/10.1038/srep26550

Admoni-Elisha, L., I. Nakdimon, A. Shteinfer, T. Prezma, T. Arif, N. Arbel, A. Melkov, O. Zelichov, I. Levi and V. Shoshan-Barmatz (2016). "Novel Biomarker Proteins in Chronic Lymphocytic Leukemia: Impact on Diagnosis, Prognosis and Treatment." PLoS ONE 11(4): e0148500. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0148500

Kruger Ben Shabat, S., G. Sasson, A. Doron-Faigenboim, T. Durman, S. Yaacoby, M. E. Berg Miller, B. A. White, N. Shterzer and I. Mizrahi (2016). "Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants." ISME J. http://dx.doi.org/10.1038/ismej.2016.62
Meir, M., V. Ransbotyn, E. Raveh, S. Barak, N. Tel-Zur and M. Zaccai (2016). "Dormancy release and flowering time in Ziziphus jujuba Mill., a “direct flowering” fruit tree, has a facultative requirement for chilling." Journal of Plant Physiology 192: 118-127. http://www.sciencedirect.com/science/article/pii/S0176161716000195
Arif, T., Y. Krelin, and V. Shoshan-Barmatz (2016). "Reducing VDAC1 expression induces a non-apoptotic role for pro-apoptotic proteins in cancer cell differentiation." Biochimica et Biophysica Acta (BBA) - Bioenergetics, Available online 12 April 2016. http://dx.doi.org/10.1016/j.bbabio.2016.04.005.

Tenenboim, H. and Y. Brotman (2016). "Omic Relief for the Biotically Stressed: Metabolomics of Plant Biotic Interactions." Trends in Plant Science. In press. http://dx.doi.org/10.1016/j.tplants.2016.04.009

Nudelman, H., C. Valverde-Tercedor, S. Kolusheva, T. Perez Gonzalez, M. Widdrat, N. Grimberg, H. Levi, O. Nelkenbaum, G. Davidov, D. Faivre, C. Jimenez-Lopez and R. Zarivach (2016). "Structure–function studies of the magnetite-biomineralizing magnetosome-associated protein MamC." Journal of Structural Biology 194(3): 244-252. http://www.sciencedirect.com/science/article/pii/S1047847716300375

Elharar, Y., Z. Roth, N. Hecht, R. Rotkopf, I. Khalaila and E. Gur (2016). "Posttranslational regulation of coordinated enzyme activities in the Pup-proteasome system." Proceedings of the National Academy of Sciences 113(12): E1605-E1614. http://www.pnas.org/content/113/12/E1605.abstract

Bouskila, A., E. Lourie, S. Sommer, H. de Vries, Z. M. Hermans and M. van Dierendonck (2015). "Similarity in sex and reproductive state, but not relatedness, influence the strength of association in the social network of feral horses in the Blauwe Kamer Nature Reserve." Israel Journal of Ecology & Evolution 61(2): 106-113. http://dx.doi.org/10.1080/15659801.2016.1149921

Bentov, S., E. D. Aflalo, J. Tynyakov, L. Glazer and A. Sagi (2016). "Calcium phosphate mineralization is widely applied in crustacean mandibles." Sci Rep 6: 22118. http://www.nature.com/articles/srep22118

Moshe, H., R. Gal, N. Barnea-Ygael, T. Gulevsky, U. Alyagon and A. Zangen (2016). "Prelimbic Stimulation Ameliorates Depressive-Like Behaviors and Increases Regional BDNF Expression in a Novel Drug-Resistant Animal Model of Depression." Brain Stimulation 9(2): 243-250. http://www.sciencedirect.com/science/article/pii/S1935861X1501219X

Rotem, G., Y. Gavish, B. Shacham, I. Giladi, A. Bouskila and Y. Ziv (2016). "Combined effects of climatic gradient and domestic livestock grazing on reptile community structure in a heterogeneous agroecosystem." Oecologia 180(1): 231-242. http://www.ncbi.nlm.nih.gov/pubmed/26350785

Hadas, I., R. Gal, L. Bokovza, N. Meiran, D. Feifel and A. Zangen (2016). "Exposure to salient, dynamic sensory stimuli during development increases distractibility in adulthood." Scientific Reports (6): 21129.

2015

Sharabi, O., R. Manor, S. Weil, E. D. Aflalo, Y. Lezer, T. Levy, J. Aizen, T. Ventura, P. B. Mather, I. Khalaila and A. Sagi (2015). "Identification and Characterization of an Insulin-Like Receptor Involved in Crustacean Reproduction." Endocrinology 157(2): 928-941. http://dx.doi.org/10.1210/en.2015-1391

Duchin, S., Z. Vershinin, D. Levy and A. Aharoni (2015). "A continuous kinetic assay for protein and DNA methyltransferase enzymatic activities." Epigenetics & Chromatin 8(1): 1-9.

Bar-Yaacov, D., Z. Hadjivasiliou, L. Levin, G. Barshad, R. Zarivach, A. Bouskila and D. Mishmar (2015). "Mitochondrial Involvement in Vertebrate Speciation? The Case of Mito-nuclear Genetic Divergence in Chameleons." Genome Biology and Evolution 7(12): 3322-3336.

Silberbush, A., Z. Abramsky and I. Tsurim (2015). "Effects of fish cues on mosquito larvae development." Acta Tropica 150: 196-199.
4

Villacorta-Martin, C., F. Nunez de Caceres Gonzalez, J. de Haan, K. Huijben, P. Passarinho, M. Lugassi-Ben Hamo and M. Zaccai (2015). "Whole transcriptome profiling of the vernalization process in Lilium longiflorum (cultivar White Heaven) bulbs." BMC Genomics 16(1): 550.

Sherman, S., D. Nachmias and N. Elia (2015). "A simple, straightforward correlative live-cell-imaging-structured-illumination-microscopy approach for studying organelle dynamics." Microscopy Research and Technique 78(9): 777-783. http://dx.doi.org/10.1002/jemt.22540

Meleppattu, S., D. Kamus-Elimeleh, A. Zinoviev, S. Cohen-Mor, I. Orr and M. Shapira (2015). "The eIF3 complex of Leishmania—subunit composition and mode of recruitment to different cap-binding complexes." Nucleic Acids Research 43(13): 6222-6235. http://nar.oxfordjournals.org/content/43/13/6222.abstract
Matsumoto, K., H. Hara, I. Fishov, E. Mileykovskaya and V. Norris (2015). "The Membrane: Transertion as an organizing principle in membrane heterogeneity." Frontiers in Microbiology 6. http://www.frontiersin.org/Journal/Abstract.aspx?s=677&name=microbial_physiology_and_metabolism&ART_DOI=10.3389/fmicb.2015.00
Venetsky, A., A. Levy-Zamir, V. Khasdan, K. Domb and K. Kashkush (2015). "Structure and extent of DNA methylation-based epigenetic variation in wild emmer wheat (T. turgidum ssp. dicoccoides) populations." BMC Plant Biology 15(1): 200. http://www.biomedcentral.com/1471-2229/15/200
Segal, N. a. and M. Shapira (2015). "HSP33 in eukaryotes – an evolutionary tale of a chaperone adapted to photosynthetic organisms." The Plant Journal 82(5): 850-860.  http://dx.doi.org/10.1111/tpj.12855
Chang, M. M., B. Imperiali, J. Eichler and Z. Guan (2015). "N-Linked Glycans Are Assembled on Highly Reduced Dolichol Phosphate Carriers in the Hyperthermophilic Archaea Pyrococcus furiosus." PLoS ONE 10(6): e0130482.

Ben-Tov, M., O. Donchin, O. Ben-Shahar and R. Segev (2015). "Pop-out in visual search of moving targets in the archer fish." Nat Commun 6. http://dx.doi.org/10.1038/ncomms7476

Kaiser, M. and F. Libersat (2015). "The role of the cerebral ganglia in the venom-induced behavioral manipulation of cockroaches stung by the parasitoid jewel wasp." The Journal of Experimental Biology 218(7): 1022-1027. http://jeb.biologists.org/content/218/7/1022.abstract

Zandany, N., S. Marciano, E. Magidovich, T. Frimerman, R. Yehezkel, T. Shem-Ad, L. Lewin, U. Abdu, I. Orr and O. Yifrach (2015). "Alternative splicing modulates Kv channel clustering through a molecular ball and chain mechanism." Nat Commun 6.


2014

Blumberg, A., B. Sri Sailaja, A. Kundaje, L. Levin, S. Dadon, S. Shmorak, E. Shaulian, E. Meshorer and D. Mishmar (2014). "Transcription Factors Bind Negatively Selected Sites within Human mtDNA Genes." Genome Biology and Evolution 6(10): 2634-2646.

  • Doron, L., N. a. Segal, H. Gibori and M. Shapira (2014). "The BSD2 ortholog in Chlamydomonas reinhardtii is a polysome-associated chaperone that co-migrates on sucrose gradients with the rbcL transcript encoding the Rubisco large subunit." The Plant Journal 80(2): 345-355.http://dx.doi.org/10.1111/tpj.12638

  • Dovrat, D., J. L. Stodola, P. M. J. Burgers and A. Aharoni (2014). "Sequential switching of binding partners on PCNA during in vitro Okazaki fragment maturation." Proceedings of the National Academy of Sciences 111(39): 14118-14123. http://www.pnas.org/content/111/39/14118.abstract

  • Gershony, O., T. Pe'er, M. Noach-Hirsh, N. Elia and A. Tzur (2014). "Cytokinetic abscission is an acute G1 event." Cell Cycle 13(21): 3436-3441. http://www.ncbi.nlm.nih.gov/pubmed/25485587

  • Giladi, I., F. May, M. Ristow, F. Jeltsch and Y. Ziv (2014). "Scale-dependent species–area and species–isolation relationships: a review and a test study from a fragmented semi-arid agro-ecosystem." Journal of Biogeography 41(6): 1055-1069. http://dx.doi.org/10.1111/jbi.12299

  • Goliand, I., D. Nachmias, O. Gershony and N. Elia (2014). "Inhibition of ESCRT-II–CHMP6 interactions impedes cytokinetic abscission and leads to cell death." Molecular Biology of the Cell 25(23): 3740-3748. http://www.molbiolcell.org/content/25/23/3740.abstract

  • Oksenberg, N., G. D. E. Haliburton, W. L. Eckalbar, I. Oren, S. Nishizaki, K. Murphy, K. S. Pollard, R. Y. Birnbaum and N. Ahituv (2014). "Genome-wide distribution of Auts2 binding localizes with active neurodevelopmental genes." Transl Psychiatry 4: e431. http://dx.doi.org/10.1038/tp.2014.78

  • Savaya Alkalay, A., O. Rosen, S. H. Sokolow, Y. P. W. Faye, D. S. Faye, E. D. Aflalo, N. Jouanard, D. Zilberg, E. Huttinger and A. Sagi (2014). "The Prawn Macrobrachium vollenhovenii in the Senegal River Basin: Towards Sustainable Restocking of All-Male Populations for Biological Control of Schistosomiasis." PLoS Negl Trop Dis 8(8): e3060. http://dx.doi.org/10.1371%2Fjournal.pntd.0003060

  • Zilkha, N., E. Feigin, N. Barnea-Ygael and A. Zangen (2014). "Induction of depressive-like effects by subchronic exposure to cocaine or heroin in laboratory rats." Journal of Neurochemistry 130(4): 575-582. http://dx.doi.org/10.1111/jnc.12753